I would guess that either flipping PR2 or PR3 would give nearly the same effect (g = 0.9) and that flipping both makes it even more stable (smaller g). But what we really need is to see the cavity scan / HOM resonance plot to compare the cases.
The difference of 0.5% in mode-matching is not a strong motivation to make a choice, but sensitivity to accidental HOM resonance of either the carrier or f1 or f2 sidebands would be. Should also check for 2*f2 and 2*f1 resonances since our modulation depth may be as high as 0.3. Accidental 2f resonance may disturb the 3f error signals.