This problem reared its ugly head again. I am inclined to believe the problem is electronic and not on the light, since the POY channels seem immune to this issue (see Attachment #1). I will investigate in the daytime tomorrow. Note that while the POX photodiode head has ~twice the transimpedance than POY (per measurement), the POY signal gets amplified by a ZHL-500-HLN amplifier before heading to the demod electronics (nominal gain is 19dB = x9). There is also some imbalance in the light level at the photodiodes I guess, because overall, the PDH fringe is ~twice as large for the Y arm as the X arm. Basically, the y-axes of the attached plot cannot be directly compared between POX and POY.
Mostly this is an annoyance - right now, the POX signal is only used for locking and dither aligning the X arm cavity, and so once that is done, the locking can proceed (as long as the other channels, e.g. REFL11, aren't glitching as well...)