A heavy duty plastic box is the likeliest candidate for the optical table toolbox. It measures 5 9/16 in. x 11 5/8 in. x 4 5/8 in. and fits all the tools comfortably. ( http://www.mcmaster.com/#plastic-bin-boxes/=m4yh4m , under Heavy Duty Plastic Bin Boxes)
The list of tools has been updated to include a pen and a wire cutter as well as everything previously stated.
In addition, Steve has recommended that boxes should be secured to the walls or surfaces near the optical tables as opposed to the optical tables themselves, as to keep the tables from wobbling when tools are being exchanged.
A diagram of tentative box placements will go out soon.
I also took every allen key I can find so they can be sorted. They will be back in the appropriate drawer locations soon.