Alex fixed the time issue with the IRIG-B signal being far off, apparently their IRIG-B signal in downs seems to be different. He simply corrected for the difference in the two signals in the code.
For debugging purposes we uncommented the following line in the feCodeGen.pl script (in /opt/rtcds/caltech/c1/advLigoRTS/src/epics/util/):
print EPICS "test_points ONE_PPS $dac_testpoint_names $::extraTestPoints\n"
This is to make every ADC testpoint available from the IOP (such as c1x02).