I've repeated the measurement for the x-direction and also did the y-direction, taking into account Koji's suggestion of keeping the power meter as close as possible to the knife edge. Attachment #1 shows a picture of the setup used. Because an ND filter is required to use this particular power meter, the geometrical constraints mean that the closest the power meter can be to the knife edge is ~3cm. I think this is okay. 

The result from the re-measured X-scan (Attachments #2 and #4) is consistent with the result from yesterday. Unfortunately, in the y-direction (Attachments #3 and #4), I don't seem to have captured much of the 'curved' part of the profile, even though I've started from pretty much adjacent to the HWP. Nevertheless, the fits look reasonable, and I think I've captured sufficient number of datapoints to have confidence in these fits - although for the Y-scan, the error in the waist position is large. The ellipticity as measured using this method is also significantly smaller than what the CCD beam profiler was telling us. 

If we are happy with this measurement, I can go ahead and work on seeing if we can arrive at a minimally invasive mode-matching solution for the X-end table once we switch the lasers out...