[yutaro, gautam]
Quote: 
Summary:
I performed a preliminary calibration of the X and Y phase trackers, and found that the slopes of a linear fit of phase tracker output as a function of driven frequency (as measured with digital frequency counter) are 0.7886 +/ 0.0016 and 0.9630 +/ 0.0012 respectively (see Attachments #1 and #2). Based on this, the EPICS calibration constants have been updated. The data used for calibration has also been uploaded (Attachment #4).

Summary:
Having obtained a working FS725 Rubidium standard and syncing it to out GPS timing unit, I wanted to have one more pass at calibrating the phase tracker output, with the RF signal generator calibrated relative to an 'absolute' source. I also extended the range of frequencies swept over to 15MHz to 110MHz. We found that the phase tracker output appears linear over the entire range scanned, but taking a closer look at the residuals suggested some quadratic structure. Restricting the fitted range to [31MHz 89MHz] yields the following calibration constants for the X and Y arm respectively: 0.9904 +/ 0.0008 and 0.9984 +/ 0.0005. This suggests that out previous calibration was pretty accurate, and that it is valid over a wider range of frequencies, so we could plausibly fit in more FSRs in future scans if necessary. I have not updated these values on the EPICS screens (though judging by how close they are to 1, I wonder if this is even necessary)...
Details:
The principle change in the setup compared to that used to collect the data presented in elog 11738 was the addition of the FS725 rubidium standard. As detailed here, I synced the Rubidium standard to our GPS timing unit (this took a while  the manual suggests it should only take minutes, but it took about 10 hours  the two photos in Attachment #1 show the status of the front panel before and after it synced to the external 1PPS input). I then took 10 MHz outputs from the FS725, and ran one to the Fluke 6061A, and the other to the AG4395A. The Fluke 6061 A has a small switch at the back which has to be set to "EXT" in order for it to use the external reference (it has now been returned to the "INT" state). We then connected the output of the signal generator via a 3way minicircuits splitter to the AG4395A, and the two beat channels.
I cleared the phase history on the MEDM screen, and set the phase tracker UGF. We then swept through frequencies from 15MHz to 110MHz (using the AG4395 to verify the frequency at each step). I used the following command to record the average value (over 10 seconds) and the standard deviation: z avg 10 s C1:ALSBEATX_FINE_PHASE_OUT_HZ >> 20151113_PT_X.dat and so on.. The amplitude of the signal generated (i.e. before the splitter) was 18dBm (chosen such that the Q outputs of either phase tracker was between 1000 and 3000), while the gains were ~100 (X) and 50 (Y). I then downloaded the data and fitted it.
Fitting details:
The output of the phase tracker looks roughly linear over the entire range of frequencies scanned  but looking at the residuals, one could say there was some quadratic structure to it (see residual plots in Attachment #2). By looking at the shapes of the residuals, I judged that if we fit in the range [31MHz 89MHz] (for both X and Y), we should see negligible structure in the residuals. Attachment #3 contains the fits and residuals for these fits. One could argue that there is still some structure in the residuals, but is markedly less than over the entire range, and, I think, small enough to be neglected. The calibration constants quoted at the beginning of the elog are from the fits over this range. In principle, we could always break this down into smaller pieces and do a linear fit over that range. But this should allow us to scan through >5 FSRs.
Other remarks:
Since the beat signal also goes to the frequency counter via the couplers, I was also collecting the readouts of the frequency counter. Attachment #5 contains the data collected. It is interesting to note that the FCs fail at ~101 MHz (corresponding to ~6146 Hz after the dividers).
Also, we had taken another dataset last night, but found that there was an anomalous kink in the X phase tracker output at (coincidentally?) 89 MHz (I've attached the data in Attachment #6). I'm not sure why this happened, but this is what led me to take another dataset earlier today (Attachment #4).
Summary of Attachments:
 Attachment #1: Photos showing the front panel of the FS725 before and after syncing to the external 1PPS input.
 Attachment #2: Fits and residuals over the entire range scanned.
 Attachment #3: Fits and residuals over restricted range [31 89] MHz
 Attachment #4: Data used for phase tracker calibration.
 Attachment #5: Frequency counter data.
