It is a nice scan. I'm still thinking about the equivalence of the moving average and the FIR low pass that I have mentioned in the meeting.

Anyways:

I'm confused by the plot. The bottom axis says "green beat frequency".
If you scan the IR laser frequency by df, you get 2*df shift of the green beatnote. You need to have this factor of two somewhere.
If you are looking at the IR beat freq, just the label is not correct. (I believe this is the case.)

Accepting the rather-too-low finesse of 363 (nominally 450), the total round trip loss is said to be 0.0173.
If we subtract the front transmission of 1.38% (and ignoring the transmission loss from the ETM),
the round trip loss is 3500ppm. Is this compatible with the following elog?
http://nodus.ligo.caltech.edu:8080/40m/11111
In fact, I'm afraid that the loss number in the above elog 11111 was not correct by a factor of 10.
Then, if so, can we believe this high loss number? (Nominally we expect ~100ppm loss per round trip...)